Home / Ecommerce Accountants in Canada
Ecommerce accountants · Canada-wide
★★★★★ 4.9 Google rating · 194+ reviews

Ecommerce accountants for Amazon, Shopify & online sellers. No tax stress.

Know your real numbers, stay right with CRA, and get back to selling. For stores, marketplaces, courses, digital products and content.

Sound familiar?

"Our payouts never match what lands in the bank. I've given up trying."

"My store charges 13% to everyone. I'm not sure that's right."

"Do I need to register for PST or QST too? I honestly don't know."

"We sell a lot in the US. I've never reported any of it here."

"We're growing fast and I'm scared about the taxes."

"Shopify, Stripe and QuickBooks just don't talk to each other."

"Duties, import GST, broker fees… I have no idea where these go."

"CRA sent me a GST/HST audit letter. I'm panicking."

How we help

Books that finally match. Every payout reconciled: fees, refunds and chargebacks.

The right rate, every province. GST/HST charged based on where your customer is.

Know where to register. And just as important, where you don't need to.

US sales, out in the open. Reported properly, with voluntary disclosure to help ease penalties and interest.

Grow without the tax worry. Catch up on what's behind and stay ahead of what's next.

Your apps, connected. Sales flowing into your books, not piling up in spreadsheets.

Landed costs that make sense. Duties tracked and import GST claimed back where you're eligible.

CRA off your plate. Someone in your corner through the audit.

End to end, all year. Stay tax-ready and stop worrying about it.
Book a 20-min store review → Call 647-243-2884 Plans from $200/mo · Fixed fee, no surprises
120+
active online stores managed
$40M+
annual ecommerce GMV reconciled
CAD & USD
multi-currency bookkeeping
4.9★
Google rating · 194+ reviews
Works seamlessly with your entire ecommerce stack
Amazon FBA / FBM Shopify WooCommerce Stripe PayPal eBay Etsy A2X QuickBooks Online Xero Synder Walmart Marketplace
WHO WE WORK WITH

Ecommerce accounting for how you actually sell.

Standard small business accountants treat online stores like a corner bakery. They wait for bank statements, guess your inventory, miss marketplace fees, and misfile your provincial sales taxes. We do the opposite.

  • Direct API sync with Shopify, Amazon, Stripe and PayPal so zero data is lost.
  • Proper gross sales reporting so you never under-report revenue to CRA or banks.
  • Automated sales tax matrix for every Canadian province and US marketplace.
  • Monthly inventory & COGS calculations based on real landed unit costs.
BUILT FOR STORE OWNERS

Stop translating bank statements to your accountant.

We speak SKU, FBA, landed cost, ad ROAS, Stripe rolling reserve, and provincial sales tax. You run the store; we take care of CRA.

✓ 100% Online ✓ All Canadian Provinces ✓ Fixed Monthly Plans

Built for store owners, brands and multi-channel sellers

Whether you sell $5,000/mo on Etsy or $200,000/mo across Amazon & Shopify

BUILT FOR STORE OWNERS

Stop translating bank statements to your accountant.

Shopify Amazon WooCommerce Stripe

We connect directly to your seller accounts. You never have to explain payout delays, reserves or gateway fees again.

MULTI-CHANNEL SELLERS

All marketplaces reconciled into one clean ledger.

Amazon FBA eBay Etsy Walmart

Amazon US, Amazon CA, Shopify and Etsy all flow into one reconciled QuickBooks or Xero file with zero duplicate sales.

INVENTORY & PRIVATE LABEL

Accurate COGS, freight & import duties tracked.

Landed Cost Freight Duties Inventory

No more guessing your margins. We calculate real cost of goods sold including ocean freight, customs brokerage and prep fees.

DIGITAL PRODUCTS & CREATORS

Courses, SaaS, digital downloads & affiliate income.

Teachable Kajabi Gumroad Patreon

Digital sales tax rules in Canada and worldwide are complex. We ensure you charge and remit only where required.

Not sure which category fits your store? Schedule a quick consultation →
CATCH-UP & CLEAN-UP

Behind or messy? Get caught up, without the judgment.

It is remarkably common in ecommerce. You scaled fast, payments flowed through 5 accounts, and bookkeeping got pushed aside. We reconstruct your records and fix it.

Years behind on your taxes

Haven't filed T2 corporate or T1 self-employed returns for 1, 2, or 3+ years? We pull raw transaction data directly from your sales platforms and get every return caught up.

We can file a CRA Voluntary Disclosure (VDP) to waive interest and penalties before CRA audits.
Fix past unfiled years →

GST/HST charged wrong, or never registered

You crossed the $30,000 threshold months ago and never registered? Or charged Ontario 13% to a customer in BC? We recalculate your true liability and fix your CRA accounts.

We retroactively claim all Input Tax Credits (ITCs) on inventory, ad spend, and software to reduce what you owe.
Fix sales tax errors →

Inventory & COGS never calculated

Expensed all inventory purchases when bought, or bank balance doesn't reflect your real profit? We calculate landed cost per unit and reconstruct proper opening and closing inventory.

Accurate balance sheets that banks and lenders require to approve working capital loans.
Untangle inventory books →
CROSS-BORDER & US SALES

Selling to the US from Canada? Get it on the record, and sleep better.

Cross-border sales create US sales tax nexus, currency exposure, and CRA foreign property reporting. We handle both sides so you never face surprise penalties.

  • "Amazon US pays in USD, but my bank converts it at terrible exchange rates."
  • "Am I supposed to collect US sales tax in every state where I have FBA inventory?"
  • "The IRS sent a 1099-K. Do I report this to CRA or file a US return?"
🇨🇦 🇺🇸

How we solve cross-border taxes:

  • ✓ Zero-rated export treatment Ensure your US sales are properly zero-rated so CRA doesn't charge you Canadian GST/HST on American buyers.
  • ✓ US Economic Nexus tracking Monitor your transaction count and dollar thresholds per state so you only register where legally required.
  • ✓ Multi-currency ledger Real FX gain/loss tracking using official Bank of Canada exchange rates.
  • ✓ Form 1099-K reconciliation Match IRS reported gross volume with your Canadian corporate tax filings to avoid audit flags.

We help Canadian sellers stay completely compliant on both sides of the border.

Talk to a cross-border CPA →
🛡 CRA DEFENSE & COMPLIANCE

No more CRA stress. We'll deal with them for you.

Ecommerce stores face heightened CRA scrutiny on GST/HST ITCs, drop-shipping zero-rating, and marketplace facilitator withholdings. We represent you directly.

CRA asks: "Prove your zero-rated export sales to US customers."
Our Representation: We supply verified marketplace settlement reports and shipping manifests confirming delivery outside Canada.
CRA asks: "Show invoices for $40,000 in Facebook & Google Ad spend ITCs."
Our Representation: We maintain reconciled ad receipts with proper CRA business numbers and tax breakdown on file.
CRA asks: "Why do your bank deposits not equal your T2 revenue?"
Our Representation: We provide audit-proof reconciliations showing marketplace fees, refunds, and reserve holds deducted before deposit.
CRA audit notice or post-assessment review letter received.
Our Representation: We act as your authorized representative. We communicate with CRA on your behalf so you never have to speak with an auditor.
Facing a CRA audit or review letter right now? Get Urgent CRA Defense →
FULL-SERVICE ECOMMERCE

Ecommerce accounting & bookkeeping, all on one file.

From daily order reconciliations to year-end T2 corporate returns, everything is managed by an experienced accounting team.

AUTOMATED RECONCILIATION

A2X & Synder Settlement Sync

Every payout period is summarized into precise journal entries. Gross sales, fees, refunds, and taxes match your bank feed down to the cent.

PAN-CANADIAN TAX

GST/HST, PST & QST Filing

We calculate and file your sales tax returns across Ontario, BC, Saskatchewan, Manitoba, and Quebec on schedule.

PROFITABILITY

Real Unit Economics & Landed COGS

Track your true net margins after ad spend, merchant fees, shipping, packaging, and product cost.

CORPORATE FILING

T2 Corporate Tax Return

Year-end financial statements (Notice to Reader / Compilation) and corporate tax return filed with optimal tax deductions.

CASH FLOW

Inventory & Cash Flow Planning

Know exactly when you can afford your next production run without draining operating cash.

YEAR-ROUND SUPPORT

Direct CPA Advisory & Slack Support

Ask questions whenever you need. No surprise invoices for picking up the phone or sending an email.

Every service is performed by experienced accounting professionals using secure, cloud-based tools.
TRANSPARENT PRICING

Fixed price. No surprises.

Predictable monthly accounting tailored to your actual order volume. No hourly surprises, no software lock-in, and full year-round support.

Starter Store
$200 /month
For early-stage online sellers doing up to $15,000/month.
  • ✓ 1 sales channel (Amazon or Shopify)
  • ✓ Monthly payout reconciliation via A2X/Synder
  • ✓ GST/HST filing & input tax credit (ITC) claims
  • ✓ Quarterly financial health summaries
  • ✓ Email support with 24h response time
  • ✓ Year-end tax return ready books
Choose Starter →
Growth Store
$350 /month
For growing stores doing $15,000 to $50,000/month.
  • ✓ Up to 3 sales channels (Shopify + Amazon + Stripe)
  • ✓ Full payout reconciliation & fees breakdown
  • ✓ Multi-provincial GST/HST, BC PST, QST returns
  • ✓ US sales reporting & 1099-K reconciliations
  • ✓ Monthly accrual P&L and balance sheet
  • ✓ Priority phone & Slack messaging with your accountant
Choose Growth →
Scale & Multi-Brand
Quoted custom
For established brands and high-volume stores doing $50,000+/month.
  • ✓ Unlimited sales channels & international stores
  • ✓ Custom inventory & landed unit COGS tracking
  • ✓ Multi-currency USD/CAD/EUR FX management
  • ✓ Dedicated Senior Ecommerce CPA
  • ✓ Bi-weekly financial reviews & cash flow forecast
  • ✓ Comprehensive CRA audit defense representation
Get Custom Quote →
Catch-Up & Clean-Up
One bundled fee one-time
For stores behind on bookkeeping or unfiled tax returns.
  • ✓ Full historical reconstruction of past unfiled years
  • ✓ Retroactive ITC tax claims to recover thousands
  • ✓ Unfiled GST/HST & T2 corporate returns caught up
  • ✓ Reconciliation of all messy bank & gateway accounts
  • ✓ CRA Voluntary Disclosure (VDP) filing if needed
  • ✓ Smooth transition into stress-free monthly service
Get a Catch-Up Plan →

All plans include monthly bookkeeping, sales tax filing, and CRA support. Corporate tax returns (T2) can be bundled at preferred client rates.

Murtaza Bhatti
DIRECT EXPERT ADVICE

Murtaza Bhatti

Founder & Lead Ecommerce CPA

Most accounting firms don't understand how digital marketplaces operate. When you work with us, your books are managed by professionals who know the difference between gross sales and net deposits.

We become your finance department so you can focus entirely on sourcing products, running ads, and growing your store.

Have a question before booking? 647-243-2884 | info@instaccountant.com
FREQUENTLY ASKED QUESTIONS

Ecommerce tax questions sellers ask us.

Clear answers to common sales tax, payout reconciliation, and cross-border accounting questions.

We use specialized middleware like A2X or Synder that connects directly to Seller Central. Every settlement period is summarized into a precise journal entry: gross sales are credited, seller fees, FBA fulfillment charges, storage, and advertising are debited, refunds and sales tax are split, and the exact net deposit matches your bank feed to the penny.
No. Sales of physical goods shipped to customers outside Canada and digital services provided to non-residents are generally zero-rated (0% GST/HST). However, they must be properly reported on Line 104 (Zero-rated exports) of your GST/HST return so CRA does not reassess them as taxable Canadian sales.
Each province has distinct economic nexus rules. In British Columbia, Saskatchewan, and Manitoba, you generally must register once you make taxable sales to residents of that province, even with no physical presence. Quebec requires registration if worldwide revenues exceed $30,000. We monitor your sales by province and handle all registrations and ongoing filings.
Under Canadian Marketplace Facilitator laws (effective July 1, 2021), marketplaces like Amazon, eBay, and Etsy collect and remit GST/HST on sales by unregistered sellers. However, once you are registered with CRA, you remain responsible for reporting and reconciling these sales. Shopify is a software platform, not a marketplace facilitator, so you must configure tax settings and file returns yourself.
Amazon US issues Form 1099-K to the IRS whenever transactions exceed thresholds. As a Canadian resident or corporation with no US permanent establishment (PE), your profits are generally protected under the Canada-US Tax Treaty (Article VII). However, you must submit a valid Form W-8BEN / W-8BEN-E to Amazon and report your worldwide income on your Canadian tax return.
Yes, catch-up bookkeeping for ecommerce is one of our primary specialties. We extract historical settlement reports directly from your seller platforms, reconstruct your books from day one, maximize retroactive Input Tax Credits (ITCs) to minimize penalties, and catch up all unfiled corporate or self-employed returns.
We help you move from cash-basis guesswork to proper accrual inventory accounting. We factor in your manufacturer cost, ocean/air freight, customs clearance fees, import duties, and 3PL prep charges into an accurate landed unit cost. You only expense inventory as it is actually sold, giving you true month-by-month profit margins.
LET'S TALK ECOMMERCE

Book a free 20-minute call. Leave with a clear plan before you hang up.

Twenty minutes on video. Tell us about your store — channels (Amazon, Shopify, Etsy), sales volume, sales tax status, and current bookkeeping pain. If we're the right fit, you leave knowing exactly what we'll handle and what it costs. If we're not, we'll point you in the right direction.

  • A clear review of your multi-channel payout & sales tax setup
  • Fixed-price quote with zero surprise billable hours
  • Guidance on US sales nexus, 1099-K & W-8BEN-E forms
  • Direct conversation with our ecommerce accounting team
Prefer email? info@instaccountant.com
Prefer phone? 647-243-2884 · Monday–Friday business hours